• Introduction to Python - Texas A&M

Python course offered by Texas A&M HPRC

• https://www.nextflow.io/
• https://www.nextflow.io/docs/latest/index.html

Nextflow is an open-source, domain-specific language and workflow manager designed for the execution and coordination of scientific and data-intensive computational workflows. It was specifically created to address the challenges faced by researchers and scientists when dealing with complex and scalable computational pipelines, particularly in fields such as bioinformatics, genomics, and data analysis. Here provided some links to start with.

• Bridges 2 Home Page

Landing Page for Bridges-2 information

• FreeSurfer Tutorials

The official MGH / Harvard tutorial page for FreeSurfer. The FreeSurfer group has provided and designed a series of tutorials for using FreeSurfer and for getting acquainted with the concepts needed to perform its various modes of analysis and processing of MRI data. The tutorials are designed to be followed along in a terminal window where commands can be copy/pasted instead of typed.

• Neocortex Documentation

Neocortex is a new supercomputing cluster at the Pittsburgh Supercomputing Center (PSC) that features groundbreaking AI hardware from Cerebras Systems.

• Trusted CI Resources Page

Very helpful list of external resources from Trusted CI

• Powerpoint - Cursor and Termius benefits for HPC

These slides provide an introduction on how Termius and Cursor, two new and freemium apps that use AI to perform more efficient work, can be used for faster HPC research.

• Slurm Community Mailing List

• scikit learn tutorial

In the realm of Python-based machine learning, Scikit-Learn stands out as one of the most powerful and versatile tools available. This introductory post serves as a gateway to understanding Scikit-Learn through explanations of introductory ML concepts along with implementations examples in Python.

• Cybersecurity Guide

Cybersecurity Guide is a comprehensive resource for students and early career professionals that provides users with a wide range of resources and up-to-date information on cybersecurity, including cybersecurity degree programs and bootcamps, career guides, as well as online courses and training opportunities. Additionally, it covers trends, best practices, and much more.

• Arkansas High Performance Computing Center

This link is a documentary website to use AHPCC.

• Getting Started Quick-Guide

A step-by-step guide to getting your first allocation for Access computing and storage resources.

• Active Inference: The Free Energy Principle in Mind, Brain, and Behavior

This textbook is the first comprehensive treatment of active inference, an integrative perspective on brain, cognition, and behavior used across multiple disciplines including computational neurosciences, machine learning, artificial intelligence, and robotics. It was published in 2022 and it's open access at this time. The contents in this textbook should be educational to those who want to understand how the free energy principle is applied to the normative behavior of living organisms and who want to widen their knowledge of sequential decision making under uncertainty.

• Scikit-learn

Scikit-learn is free software machine learning library for Python. It has a variety of features you can use on data, from linear regression classifiers to xg-boost and random forests. It is very useful when you want to analyze small parts of data quickly.

• OpenStack Tutorial For Beginners

OpenStack Tutorial For Beginners

• Introduction to OpenMP API

The following link elaborates the usage of OpenMP API and its related syntax. There are also several exercises available for learners to help them get familiar with this widely-used tool for multi-threaded realization.

• TUPA - Electric field analyses for molecular simulations

Tool to compute electric fields from molecular simulations

• Why Mentoring Matters and How to Get Started

Describes effective mentorship (both ways).

• Neurostars

A question and answer forum for neuroscience researchers, infrastructure providers and software developers.

• CMake Tutorials

CMake is an open-source tool used to manage the build process in operating systems. This tutorial takes you through how to use CMake from the very basics with example projects.

• Open Storage Network

The Open Storage Network, a national resource available through the XSEDE resource allocation system, is high quality, sustainable, distributed storage cloud for the research community.

• ACCESS Allocations How-To Video

This video will walk you through the process of efficiently utilizing and managing your ACCESS project(s). Here, you’ll find instructions on how to request resources, extend the end date of a project, renew a request, and all the other necessary tasks to successfully manage your project.

• Expanse Home Page

Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers Composable Systems and Cloud Bursting.

• The Ultimate Guide to LLM Fine Tuning: Best Practices & Tools

With the recent uprising of LLM's many business are looking at way to adopt these LLMs and fine-tuning these models on specfic data sets to ensure accuracy. These models when fine-tuned can be optimal for fulfilling the specific needs of a company. This site explains explicitly when, how, and why models should be trained. It goes over various strategies for LLM fine -tuning.

• solving DE with neural networks

Differential equations, the backbone of countless physical phenomena, have traditionally been solved using numerical methods or analytical techniques. However, the advent of deep learning introduces an intriguing alternative: Physics-Informed Neural Networks (PINNs). By leveraging the representational power of neural networks and integrating physical laws (like differential equations), PINNs offer a novel approach to solving complex problems. This guide walks through an implementation of a PINN to solve DEs such as the logistic equation.