Knowledge Base Resources
These resources have been contributed and “vetted” by the community of cyberinfrastructure professionals (researchers, research computing facilitators, research software engineers and HPC system administrators) that are participating in programs such as this one, that are supported by the ConnectCI community management platform. Additional Knowledge Base Resources are always welcome!
Long Tales of Science: A podcast about women in HPC
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A series of interviews with women in the HPC community
Why 'N How: Martinos Center for Biomedical Imaging:
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The Why & How seminar series is designed to introduce research assistants, graduate students, and postdoctoral and clinical fellows – really, anyone who is interested – to the many tools used in medical imaging. These include software tools and most of the major imaging modalities wielded by investigators (MRI, PET, EEG, MEG, optical, TMS and others). As the name of the series suggests, the talks cover both the reasons researchers might need a particular tool and the nuts and bolts of how to apply it. You can watch videos of the overviews below.
ACCESS Resource Advisor
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A web-based tool to help researchers identify appropriate ACCESS resources for their project.
Trusted CI Resources Page
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Very helpful list of external resources from Trusted CI
Slurm User Group Mailing List
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Neocortex Documentation
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Neocortex is a new supercomputing cluster at the Pittsburgh Supercomputing Center (PSC) that features groundbreaking AI hardware from Cerebras Systems.
Bioinformatics Workflow Management with Nextflow
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Nextflow is an open-source, domain-specific language and workflow manager designed for the execution and coordination of scientific and data-intensive computational workflows. It was specifically created to address the challenges faced by researchers and scientists when dealing with complex and scalable computational pipelines, particularly in fields such as bioinformatics, genomics, and data analysis.
Here provided some links to start with.
Building the ArduPilot environment for Linux
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This article provides instructions for building AirSim, an open-source simulator for autonomous vehicles, on Linux. It outlines the steps to build Unreal Engine, clone and build the AirSim repository, and set up the Unreal environment. It also includes information on how to use AirSim and optional setups such as remote control for manual flight.
ACCESS KB Guide - Anvil
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Purdue University is the home of Anvil, a powerful supercomputer that provides advanced computing capabilities to support a wide range of computational and data-intensive research spanning from traditional high-performance computing to modern artificial intelligence applications.
Resource to active inference
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Active inference is an emerging study field in machine learning and computational neuroscience. This website in particular introduces "active inference institute", which has established a couple of years ago, and contains a wide variety of resources for understanding the theory of active inference and for participating a worldwide active inference community.
AI for improved HPC research - Cursor and Termius - Powerpoint
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These slides provide an introduction on how Termius and Cursor, two new and freemium apps that use AI to perform more efficient work, can be used for faster HPC research.
Machine Learning with sci-kit learn
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In the realm of Python-based machine learning, Scikit-Learn stands out as one of the most powerful and versatile tools available. This introductory post serves as a gateway to understanding Scikit-Learn through explanations of introductory ML concepts along with implementations examples in Python.
Hour of Ci
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Hour of Cyberinfrastructure (Hour of CI) is a nationwide campaign to introduce undergraduate and graduate students to cyberinfrastructure and geographic information science (GIS).
Numpy - a Python Library
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Numpy is a python package that leverages types and compiled C code to make many math operations in Python efficient. It is especially useful for matrix manipulation and operations.
Slurm Tutorials
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Introduction to the Slurm Workload Manager for users and system administrators, plus some material for Slurm programmers.
Campus Champions Home Page
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Campus Champions foster a dynamic environment for a diverse community of research computing and data professionals sharing knowledge and experience in digital research infrastructure.
Natural Language Processing with Deep Learning
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CS244N is a renowned natural language processing course offered by Stanford University and taught by Christopher Manning. It covers a wide range of topics in NLP, including language modeling, machine translation, sentiment analysis, and more. It teaches both foundational concepts and cutting-edge research to gain a comprehensive understanding of NLP techniques and applications.
GIS: Projections and their distortions
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In GIS, projections are helpful to take something plotted on a globe and convert it to a flat map that we can print or show on a screen. Unfortunately it also introduces distortions to the objects and features on the map. This not only distorts the objects visually, but the results for any spatial attribute calculations will also reflect this distortion (such as distance and area ). Below is a link to a quick primer on projections, types of distortions that can occur, and suggestions on how to choose a correct projection for your work.
ACCESS Getting Started Quick-Guide
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A step-by-step guide to getting your first allocation for Access computing and storage resources.
CaRCC Data Facing Track
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The Data-Facing Track of the People Network brings together people from research computing groups, libraries, research institutes, and other organizations who support data-enabled research. Many of us are also Researcher-Facing, but this track is an opportunity to discuss the varied challenges of working with data.
OpenStack Tutorial For Beginners
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OpenStack Tutorial For Beginners
CMake Tutorials
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CMake is an open-source tool used to manage the build process in operating systems. This tutorial takes you through how to use CMake from the very basics with example projects.
Electric field analyses for molecular simulations
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Tool to compute electric fields from molecular simulations