• Carpentries.org

We teach foundational coding and data science skills to researchers worldwide.

• HPC University Resources

A comprehensive list of training resources from the HPC University. HPCU is a virtual organization whose primary goal is to provide a cohesive, persistent, and sustainable on-line environment to share educational and training materials for a continuum of high performance computing environments that span desktop computing capabilities to the highest-end of computing facilities offered by HPC centers.

• Workshop Tutorial

This comprehensive workshop is designed to guide participants through the world of cryptography, from foundational concepts to advanced implementations. Starting with the basics of encryption, decryption, and hashing, the workshop discusses real-world applications like SSL, blockchain, and digital signatures. Interactive Python-based coding examples, such as symmetric and asymmetric encryption, will provide hands-on experience. Participants will also learn to identify cryptographic vulnerabilities and perform attacks like length extension. Finally, the workshop also explores future trends such as quantum cryptography and zero-knowledge proofs, providing participants with the knowledge to apply cryptography in securing modern digital systems. Ideal for beginners and intermediate learners alike, this workshop is a step-by-step journey into mastering cryptographic principles and practices.

• Open Ondemand Home Page

Open OnDemand is an easy-to-use web portal that lets students, researchers, and industry professionals use supercomputers from anywhere. It is installed on supercomputing resources at hundreds of sites. By eliminating the need for client software or command-line interface, Open OnDemand empowers users of all skill levels and significantly speeds up the time to their first computing.

• Open OnDemand Documentation repo

This is the main documentation repo for the Open OnDemand Portal which enables researchers to access HPC resources from a familiar web interface.

• MatPlotLib Docs

Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. It makes analyzing and presenting your data extremely easy and works with Python which many people already know.

• Landing Page
• Preparing data for LLM training
• Small Language Models: an introduction to autoregressive language modeling
• Attention is all you need
• Other LLM Topics

This workshop focuses on developing an understanding of the fundamentals of attention and the transformer architecture so that you can understand how LLMs work and use them in your own projects.

• DARWIN Documentation

DARWIN (Delaware Advanced Research Workforce and Innovation Network) is a big data and high performance computing system designed to catalyze Delaware research and education

• https://www.udacity.com/blog/2021/01/best-r-packages-for-data-science.html

This Udacity article listed the most frequently used R packages for data science and statistics. For each package, the article provided the link to its official documentation. It will be a great start point if you want to start your data science journey in R.

• ACESS HPC Workshop Series
• MPI Workshop
• OpenMP Workshop
• GPU Programming Using OpenACC
• Summer Boot Camp
• Big Data and Machine Learning

Monthly workshops sponsored by ACCESS on a variety of HPC topics organized by Pittsburgh Supercomputing Center (PSC). Each workshop will be telecast to multiple satellite sites and workshop materials are archived.

• ACCESS Pegasus Documentation

The documentation provides an overview of using Pegasus, a workflow management system, on ACCESS resources for high throughput computing (HTC) workloads, covering logging in, workflow creation, resource configuration, and monitoring options.

• HPC Carpentry

An HPC focused Carpentry community. Trainings include: HPC fundamentals, python, chapel, LAMMPS, parallelization with python, scaling studies, etc.

• Landing Page
• Pytorch Quickstart
• Pytorch Basics
• Pytorch GPU Support
• Regression and Classification with Fully Connected Neural Networks
• High Dimensional Data
• Datasets and data loading
• Building the network
• Computer Vision and Convolutional Neural Networks

This workshop series introduces the essential concepts in deep learning and walks through the common steps in a deep learning workflow from data loading and preprocessing to training and model evaluation. Throughout the sessions, students participate in writing and executing simple deep learning programs using Pytorch – a popular Python library for developing, training, and deploying deep learning models.

• Roadmaps in Cornell Virtual Workshop
• Search for topics

Cornell Virtual Workshop is a comprehensive training resource for high performance computing topics. The Cornell University Center for Advanced Computing (CAC) is a leader in the development and deployment of Web-based training programs. Our Cornell Virtual Workshop learning platform is designed to enhance the computational science skills of researchers, accelerate the adoption of new and emerging technologies, and broaden the participation of underrepresented groups in science and engineering. Over 350,000 unique visitors have accessed Cornell Virtual Workshop training on programming languages, parallel computing, code improvement, and data analysis. The platform supports learning communities around the world, with code examples from national systems such as Frontera, Stampede2, and Jetstream2.

• Tidy Geocoder: geocoder services
• GeoPy: Gecoders

Geocoding is the process of taking a street address and converting it into coordinates that can be plotted on a map. This conversion typically requires an API call to a remote server hosted by an organization/institution. The remote server will take the address attributes provided by you and the remote server will compare it to the data it contains and return a best estimate on the coordinates for that location. There are many geocoding services available with different world coverages, quality of result, and set different rate limits for access. For R, a package called "tidygeocoder" provides an easy way to connect to these different services. As an additional benefit, their documentation provides a good summary of geocoding services available and links to their documentation. The link to the documentation for gecoding services accessible by "tidygeocoder" is provided below. For Python, geopy package is a library that provides connection to various geocoding services. The link to the documentation for this package is also included below.

• NCSA HPC Training Moodle Site

Self-paced tutorials on high-end computing topics such as parallel computing, multi-core performance, and performance tools. Other related topics include 'Cybersecurity for End Users' and 'Developing Webinar Training.' Some of the tutorials also offer digital badges. Many of these tutorials were previously offered on CI-Tutor. A list of open access training courses are provided below. Parallel Computing on High-Performance Systems Profiling Python Applications Using an HPC Cluster for Scientific Applications Debugging Serial and Parallel Codes Introduction to MPI Introduction to OpenMP Introduction to Visualization Introduction to Performance Tools Multilevel Parallel Programming Introduction to Multi-core Performance Using the Lustre File System

• Using Linux Commands in a Python Script

Learn how to use Linux commands in a python script. Specifically, learn how to use the subprocess and os modules in python to run shell commands (which run Linux commands) in a python script that is run on a cluster.

• Plumed
• WESTPA

Tools and plugins to enhance molecular dynamics sampling

• GDAL Multi-threading

Multi-threading guidance when using GDAL.

• Neural Networks in Julia using Flux.jl

Making a neural network has never been easier! The following link directs users to the Flux.jl package, the easiest way of programming a neural network using the Julia programming language. Julia is the fastest growing software language for AI/ML and this package provides a faster alternative to Python's TensorFlow and PyTorch with a 100% Julia native programming and GPU support.

• Bash shell tutorial

Training materials for using the bash (and zsh) shell.

• https://www.mathworks.com/products/bioinfo.html

Bioinformatics Toolbox provides algorithms and apps for Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology. Using toolbox functions, you can read genomic and proteomic data from standard file formats such as SAM, FASTA, CEL, and CDF, as well as from online databases such as the NCBI Gene Expression Omnibus and GenBank.

• OnShape FeatureScripts

OnShape FeatureScripts allow users to create their own features via OnShape's programming language. The user can make these as simple or complex as they need, and they can save tons of time for heavy OnShape users or complex projects!

• PyTorch Tutorial at Stanford University

This is a very barebones introduction to the PyTorch framework used to implement machine learning. This tutorial implements a feed-forward neural network and is taught completely asynchronously through Stanford University. A good start after learning the theory behind feed-forward neural networks.

• DeepChem Tutorial

DeepChem is an open-source library built on TensorFlow and PyTorch. It is helpful in applying machine learning algorithms to molecular data.