Knowledge Base Resources
The Carpentries
We teach foundational coding and data science skills to researchers worldwide.
Website
Beginner, Intermediate, Advanced
HPC University
A comprehensive list of training resources from the HPC University. HPCU is a virtual organization whose primary goal is to provide a cohesive,… more
Learning
debugging hpc-operations professional-development
Beginner, Intermediate, Advanced
An Introduction to Cryptography with Python
This comprehensive workshop is designed to guide participants through the world of cryptography, from foundational concepts to advanced… more
Website
python data-security cybersecurity
Beginner, Intermediate
Open OnDemand
Open OnDemand is an easy-to-use web portal that lets students, researchers, and industry professionals use supercomputers from anywhere. It is… more
Website
open-ondemand administering-hpc cluster-management
Beginner, Intermediate, Advanced
Relion - Cryo-EM structure determination software
RELION (REgularised LIkelihood OptimisatioN, pronounced rely-on) is a stand-alone software package developed by Sjors Scheres' group at the MRC… more
Website
machine-learning data-analysis image-processing
Beginner, Intermediate, Advanced
Rust Web Server Tutorial
This is a beginner-friendly tutorial on how to set up your web server using Rust!
Docs
Beginner
The Chronicle of Evidence-Based Mentoring
This is a great mentoring resource and has many articles related to mentoring. It is a one-stop shop for mentoring, and at the bottom, there are tags… more
Website
Beginner
ACCESS HPC Workshop Series
Monthly workshops sponsored by ACCESS on a variety of HPC topics organized by Pittsburgh Supercomputing Center (PSC). Each workshop will be telecast… more
Learning
deep-learning machine-learning neural-networks
Beginner, Intermediate
ACCESS Pegasus Documentation
The documentation provides an overview of using Pegasus, a workflow management system, on ACCESS resources for high throughput computing (HTC)… more
Docs
Beginner, Intermediate, Advanced
Attention, Transformers, and LLMs: a hands-on introduction in Pytorch
This workshop focuses on developing an understanding of the fundamentals of attention and the transformer architecture so that you can understand how… more
Learning
ai deep-learning machine-learning
Intermediate
CCMNet Mentorship Presentation Templates
These are the templates for the launch and wrap presentations used by the Cyberinfrastructure Community-Wide Mentorship Network
Docs
community-outreach mentorship professional-development
Beginner
Containerized Jupyter Notebooks for HPCs
This tutorial demonstrates how to create, manage, and deploy containerized Jupyter simulations for High-Performance Computing (HPC) environments,… more
Learning
cloud cloud-computing openstack
Intermediate
Cornell Virtual Workshop
Cornell Virtual Workshop is a comprehensive training resource for high performance computing topics. The Cornell University Center for Advanced… more
Learning
jetstream stampede2 cloud-computing
Beginner, Intermediate, Advanced
DARWIN Documentation Pages
DARWIN (Delaware Advanced Research Workforce and Innovation Network) is a big data and high performance computing system designed to catalyze… more
Docs
Beginner, Intermediate, Advanced
Data Visualization tools for Python
Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. It makes analyzing and presenting your… more
Docs
Beginner, Intermediate
DeapSECURE – Data-Enabled Advanced Computational Training Platform for Cybersecurity Research and Education
DeapSECURE is a training program to infuse high-performance computational techniques into cybersecurity research and education. It is an NSF-funded… more
Learning
ai deep-learning machine-learning
Beginner
Enhancing LLMs with RAG: A Beginner’s Guide
This beginner-friendly guide introduces Retrieval-Augmented Generation (RAG), a technique to enhance Large Language Models (LLMs) by integrating… more
Learning
Beginner
Gentle Introduction to Programming With Python
This course from MIT OpenCourseWare (OCW) covers very basic information on how to get started with programming using Python. Lectures are available,… more
Learning
Beginner
GIS: Geocoding Services
Geocoding is the process of taking a street address and converting it into coordinates that can be plotted on a map. This conversion typically… more
Docs
Beginner, Intermediate
HPC Carpentry
An HPC focused Carpentry community. Trainings include: HPC fundamentals, python, chapel, LAMMPS, parallelization with python, scaling studies, etc.
Website
Beginner, Intermediate, Advanced
Introduction to Deep Learning in Pytorch
This workshop series introduces the essential concepts in deep learning and walks through the common steps in a deep learning workflow from data… more
Learning
ai deep-learning image-processing
Beginner, Intermediate
Introduction to Python for Digital Humanities and Computational Research
This documentation contains introductory material on Python Programming for Digital Humanities and Computational Research. This can be a go-to… more
Docs
Beginner
Leveraging AI in Generative Assets and Environments for Play: Insights from the English Department's Digital Media Lab
In this presentation, I will explore the recent advancements in AI-driven production of 3D-generative assets and environments, particularly focusing… more
Slides
Beginner
Managing Python Packages on an HPC Cluster
This workshop will go into the different ways python packages can be managed in a cluster environment using conda and python virtual environments… more
Docs
documentation pytorch data-science
Intermediate
NCSA HPC Training Moodle
Self-paced tutorials on high-end computing topics such as parallel computing, multi-core performance, and performance tools. Other related topics… more
Learning
performance-tuning profiling parallelization
Beginner, Intermediate
Open OnDemand Documentation Repository
This is the main documentation repo for the Open OnDemand Portal which enables researchers to access HPC resources from a familiar web interface.
Docs
Beginner, Intermediate, Advanced
PyTorch for Deep Learning and Natural Language Processing
PyTorch is a Python library that supports accelerated GPU processing for Machine Learning and Deep Learning. In this tutorial, I will teach the… more
Docs
Beginner
Tutorial: Localized RAG Chatbot with ACCESS HPC
This tutorial shows how to set up an open-source customizable RAG chatbot to answer questions about documents you can choose. It uses Indiana's… more
Tool
Beginner, Intermediate
Useful R Packages for Data Science and Statistics
This Udacity article listed the most frequently used R packages for data science and statistics. For each package, the article provided the link to… more
Docs
plotting visualization data-analysis
Beginner, Intermediate, Advanced
Using Linux commands in a python script (and the difference between the subprocess and os python modules)
Learn how to use Linux commands in a python script. Specifically, learn how to use the subprocess and os modules in python to run shell commands (… more
Learning
cluster-management programming python
Beginner, Intermediate
Version control with Git
Understand the benefits of an automated version control system and the basics of how automated version control systems work. Configure git the first… more
Learning
Beginner
Neurostars
A question and answer forum for neuroscience researchers, infrastructure providers and software developers.
Website
documentation image-processing data-sharing
Beginner, Intermediate, Advanced
Paraview UArizona HPC links (advanced)
These links take you to visualization resources supported by the University of Arizona's HPC visualization consultant ([rtdatavis.github.io](… more
Docs
Intermediate, Advanced
A guide to pip in Python
pip stands for "pip installs packages". It's the go-to package manager for Python, allowing developers to install, update, and manage… more
Learning
Beginner, Intermediate
A visual introduction to Gaussian Belief Propagation
This website is an interactive introduction to Gaussian Belief Propagation (GBP). A probabilistic inference algorithm that operates by passing… more
Website
Beginner, Intermediate
ACCESS - Video for new ACCESS users
This is a short video on how to exchange ACCESS credits and connect to Jetstream 2 (please note this was created for Duke users but applies to all) .
Video
ACCESS-account ACCESS-credits exchange-request
Beginner
ACCESS Campus Champion Example Allocation
ACCESS requests proposals to be written following NSF proposal guidelines. The link provides an example of an ACCESS proposal using an NSF LaTeX… more
Learning
allocations-proposal proposal-request research-facilitation
Beginner
ACCESS Events and Training
Listing of upcoming ACCESS related events and training activities.
Website
professional-development training workforce-development
Beginner
ACCESS Getting Started Quick-Guide
A step-by-step guide to getting your first allocation for Access computing and storage resources.
Website
ACCESS-account ACCESS-credits allocations-proposal
Beginner
ACCESS Guide (originally given at Duke OIT)
A guide for Duke OIT on how to advise users on using ACCESS and allocation credits to jetstream 2 for Duke University members. This can be used for… more
Docs
ACCESS-credits adding-users allocation-management
Intermediate, Advanced
ACCESS KB Guide - DELTA
NCSA is the home of Delta, a computing and data resource that balances cutting-edge graphics processor and CPU architectures with a non-POSIX file… more
Docs
Beginner, Intermediate, Advanced
ACCESS KB Guide - Expanse
Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers Composable Systems and Cloud Bursting. This… more
Docs
expanse composable-systems gpu
Beginner, Intermediate, Advanced
ACCESS Support Portal
Website
affinity-group pegasus ACCESS-website
Beginner, Intermediate, Advanced
ACCESS Video Learning Center
A library of short videos about ACCESS allocations, resources and support.
Video
Beginner
ACES: Charliecloud Containers for Scientific Workflows (Tutorial)
This tutorial introduces the use of Containers using the Charliecloud software suite. This tutorial will provide participants with background and… more
Learning
Beginner
Active inference textbook
This textbook is the first comprehensive treatment of active inference, an integrative perspective on brain, cognition, and behavior used across… more
Learning
ai machine-learning neural-networks
Beginner, Intermediate, Advanced
Advanced Compilers: The Self-Guided Online Course
This is a self guided online course on compilers. The topics covered throughout the course include universal compilers topics like intermediate… more
Learning
optimization parallelization training
Advanced
Advanced Mathematical Optimization Techniques
Mathematical optimization deals with the problem of finding numerically minimums or maximums of a functions. This tutorial provides the Python… more
Learning
Beginner, Intermediate, Advanced
AI for improved HPC research - Cursor and Termius - Powerpoint
These slides provide an introduction on how Termius and Cursor, two new and freemium apps that use AI to perform more efficient work, can be used for… more
Slides
documentation ai machine-learning
Beginner, Intermediate
AI Institutes Cyberinfrastructure Documents: SAIL Meeting
Materials from the SAIL meeting (https://aiinstitutes.org/2023/06/21/sail-2023-summit-for-ai-leadership/). A space where AI researchers can learn… more
Learning
ACCESS-account ai data-analysis
Beginner, Intermediate, Advanced
AI powered VsCode Editor
**Cursor: The AI-Powered Code Editor**
Cursor is a cutting-edge, AI-first code editor designed to revolutionize the way developers… more
Tool
Beginner, Intermediate
AI/ML TechLab - Accelerating AI/ML Workflows on a Composable Cyberinfrastructure
This technology lab contains a set of sessions to help a new user start an AI project on the ACES cluster, a composable accelerator testbed at Texas… more
Docs
Intermediate
An Introduction to the Julia Programming Language
The Julia Programming Language is one of the fastest growing software languages for AI/ML development. It writes in manner that's similar to… more
Learning
ai data-analysis machine-learning
Beginner
Anvil Documentation
Documentation for Anvil, a powerful supercomputer at Purdue University that provides advanced computing capabilities to support a wide range of… more
Docs
Beginner, Intermediate, Advanced
Anvil Home Page
Purdue University is the home of Anvil, a powerful supercomputer that provides advanced computing capabilities to support a wide range of… more
Website
Beginner, Intermediate, Advanced
Apache HTTP Server 2.4 Security Best Practices
The webpage provides guidelines for securing an Apache HTTP Server (version 2.4). It covers best practices such as minimizing module usage,… more
Docs
authentication data-security cybersecurity
Beginner, Intermediate, Advanced
Apache HTTP Server 2.4 Security Vulnerabilities
The webpage lists known security vulnerabilities affecting Apache HTTP Server 2.4, including detailed descriptions, impact assessments, and… more
Docs
computer-science data-security cybersecurity
Beginner, Intermediate, Advanced
Application Fundamentals (Android)
The provided text discusses various aspects of Android app development fundamentals. It covers key concepts related to app components, the… more
Website
Beginner, Intermediate
Applications of Machine Learning in Engineering and Parameter Tuning Tutorial
Slides for a tutorial on Machine Learning applications in Engineering and parameter tuning given at the RMACC conference 2019.
Learning
data-analysis machine-learning python
Beginner, Intermediate
Ask.CI Q&A Platform for Research Computing
Website
resources programming-best-practices
Beginner, Intermediate, Advanced
Astronomy data analysis with astropy
Astropy is a community-driven package that offers core functionalities needed for astrophysical computations and data analysis. From coordinate… more
Learning
visualization image-processing astrophysics
Intermediate, Advanced
Automated Machine Learning Book
The authoritative book on automated machine learning, which allows practitioners without ML expertise to develop and deploy state-of-the-art machine… more
Learning
ai data-analysis deep-learning
Intermediate, Advanced
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)
A curated list of awesome Jupyter widget packages and projects for building interactive visualizations for Python code
Learning
Beginner, Intermediate, Advanced
AWS Tutorial For Beginners
An AWS Tutorial for Beginners is a course that teaches the basics of Amazon Web Services (AWS), a cloud computing platform that offers a wide range… more
Video
Beginner, Intermediate
Beautiful Soup - Simple Python Web Scraping
This package lets you easily scrape websites and extract information based on html tags and various other metadata found in the page. It can be… more
Tool
Beginner, Intermediate
Benchmarking with a cross-platform open-source flow solver, PyFR
What is PyFR and how does it solve fluid flow problems?
PyFR is an open-source Computational Fluid Dynamics (CFD) solver that is based on… more
Tool
finite-element-analysis benchmarking parallelization
Intermediate
Better Scientific Software (BSSw)
The Better Scientific Software (BSSw) project provides a community to collaborate and learn about best practices in scientific software development.… more
Website
community-outreach project-management research-facilitation
Beginner, Intermediate, Advanced
Big Data Research at the University of Colorado Boulder
Background: Big data, defined as having high volume, complexity or velocity, have the potential to greatly accelerate research discovery. Such data… more
Docs
Beginner
Bioinformatics Workflow Management with Nextflow
Nextflow is an open-source, domain-specific language and workflow manager designed for the execution and coordination of scientific and data-… more
Docs
cloud-computing parallelization data-management
Beginner, Intermediate
Biopython Tutorial
The Biopython Tutorial and Cookbook website is a dedicated online resource for users in the field of computational biology and bioinformatics. It… more
Learning
bioinformatics genomics python
Beginner, Intermediate, Advanced
Building Anaconda Navigator applications
This tutorial explains how to create an Anaconda Navigator Application (app) for JupyterLab. It is intended for users of Windows, macOS, and Linux… more
Tool
Intermediate
Building the ArduPilot environment for Linux
This article provides instructions for building AirSim, an open-source simulator for autonomous vehicles, on Linux. It outlines the steps to build… more
Docs
profiling data-transfer github
Beginner
C Programming
"These notes are part of the UW Experimental College course on Introductory C Programming. They are based on notes prepared (beginning in Spring… more
Learning
Beginner
Campus Champions Home Page
Campus Champions foster a dynamic environment for a diverse community of research computing and data professionals sharing knowledge and experience… more
Website
community-outreach professional-development
Beginner, Intermediate, Advanced
Campus Research Computing Consortium (CaRCC)
CaRCC – the Campus Research Computing Consortium – is an organization of dedicated professionals developing, advocating for, and advancing campus… more
Website
community-outreach professional-development research-facilitation
Beginner, Intermediate, Advanced
CaRCC Data Facing Track
The Data-Facing Track of the People Network brings together people from research computing groups, libraries, research institutes, and other… more
Website
data-analysis data-access-protocols data-lifecycle
Beginner, Intermediate, Advanced
Chameleon
Chameleon is an NSF-funded testbed system for Computer Science experimentation. It is designed to be deeply reconfigurable, with a wide variety of… more
Docs
data-sharing data-reproducibility
Beginner, Intermediate, Advanced
Charliecloud User Group
Announcements for for users and developers of Charliecloud, which provides lightweight user-defined software stacks for high-performance computing.
Mailing List
Beginner
CHARMM Links to Install, Run, and Troubleshoot MD Simulations
CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a widely distributed molecular simulation program with a broad array of applications.… more
Learning
charmm molecular-dynamics namd
Beginner, Intermediate
CI Computing Module For All
Computing Module: Introduces fundamental concepts and skills of Cyberinfrastructure (CI) and High-Performance Computing (HPC) to lower the barrier to… more
Learning
ai computer-vision neural-networks
Beginner
CMake Tutorials
CMake is an open-source tool used to manage the build process in operating systems. This tutorial takes you through how to use CMake from the very… more
Learning
Beginner, Intermediate, Advanced
Containerization Explained
Containerization is a software development method in which applications are packaged into standard units for development, shipment, and deployment.
Video
Beginner
Creating a Mobile Application
Goes through in detail on how to build an application that can run on Android and IOS devices, using Qt Creator to develop Qt Quick applications.… more
Website
Intermediate
CUDA Toolkit Documentation
NVIDIA CUDA Toolkit Documentation: If you are working with GPUs in HPC, the NVIDIA CUDA Toolkit is essential. You can access the CUDA Toolkit… more
Docs
Intermediate, Advanced
Cyber Security
learning cybersecurity is crucial for personal protection, safeguarding digital assets, financial security, and national security. It is important… more
Learning
training data-security cybersecurity
Beginner
CyberAmbassadors: Professional Skills for Interdisciplinary Work
The CyberAmbassadors project was funded through a workforce development grant from the National Science Foundation (Award #1730137). Starting in 2017… more
Learning
mentorship professional-development research-facilitation
Beginner, Intermediate, Advanced
Cybersecurity Guide
Cybersecurity Guide is a comprehensive resource for students and early career professionals that provides users with a wide range of resources and up… more
Website
resources training data-security
Beginner, Intermediate, Advanced
DAGMan for orchestrating complex workflows on HTC resources (High Throughput Computing)
DAGMan (Directed Acyclic Graph Manager) is a meta-scheduler for HTCondor. It manages dependencies between jobs at a higher level than the HTCondor… more
Tool
Intermediate, Advanced
Data Analysis with R for Educators
This webinar series is an orientation to R. We start with an overview of R’s history and place in the larger data science ecosystem. Next, we… more
Video
data-analysis data-science psychology
Beginner
Data Imputation Methods for Climate Data and Mortality Data
This slices and videos introduced how to use K-Nearest-Neighbors method to impute climate data and how to use Bayesian Spatio-Temporal models in R-… more
Video
allocation-value documentation ai
Intermediate, Advanced
Data Visualization Tools for Julia
Plots.jl is the most widely used plotting library for the Julia programming language. It's known for being especially powerful in its… more
Tool
Beginner, Intermediate
Data visualization with Matplotlib
Data visualization is a critical aspect of data analysis. It allows for a clear and concise representation of data, making it easier for users to… more
Website
Beginner
DeepChem
DeepChem is an open-source library built on TensorFlow and PyTorch. It is helpful in applying machine learning algorithms to molecular data.
Tool
pytorch tensorflow computational-chemistry
Beginner, Intermediate, Advanced
DELTA Introductory Video
Introductory video about DELTA. Speaker Tim Boerner, Senior Assistant Director, NCSA
video
Beginner, Intermediate, Advanced
Developer Stories Podcast
As developers, we get excited to think about challenging problems. When you ask us what we are working on, our eyes light up like children in a candy… more
Website
community-outreach professional-development training
Beginner, Intermediate, Advanced
Discover Data Science
Discover Data Science is all about making connections between prospective students and educational opportunities in an exciting new, hot, and growing… more
Website
data-analysis workforce-development
Beginner
Displaying Scientific Data with Tableau
Tableau is a popular and capable software product for creating charts that present data and dashboards that allow you to explore data. It is… more
Video
big-data data-analysis training
Intermediate
Docker - Containerized, reproducible workflows
Docker allows for containerization of any task - basically a smaller, scalable version of a virtual machine. This is very useful when transferring… more
Tool
documentation cloud-computing deep-learning
Intermediate, Advanced
Docker Container Library
The Docker container library, commonly known as Docker Hub, is a vast repository that hosts a multitude of pre-configured container images,… more
Tool
Docker Tutorial for Beginners
A Docker tutorial for beginners is a course that teaches the basics of Docker, a containerization platform that allows you to package your… more
Video
Beginner, Intermediate, Advanced
EasyBuild Documentation
EasyBuild is a software installation framework that allows administrators to easily build and install software on high-performance computing (HPC)… more
Docs
Intermediate
Educause HEISC-800-171 Community Group
The purpose of this group is to provide a forum to discuss NIST 800-171 compliance. Participants are encouraged to collaborate and share effective… more
Website
Beginner, Intermediate, Advanced
Examples of code using JSON nlohmann header only Library for C++
This code showcases how to work with the header-only nlohmann JSON library for C++. In order to compile, change the extensions from json_test.txt to… more
Learning
Advanced
Examples of Thrust code for GPU Parallelization
Some examples for writing Thrust code. To compile, download the CUDA compiler from NVIDIA. This code was tested with CUDA 9.2 but is likely… more
Learning
Intermediate, Advanced
Expanse Home Page
Expanse at SDSC is a cluster designed by Dell and SDSC delivering 5.16 peak petaflops, and offers Composable Systems and Cloud Bursting.
Website
Beginner, Intermediate, Advanced
Factor Graphs and the Sum-Product Algorithm
A tutorial paper that presents a generic message-passing algorithm, the sum-product algorithm, that operates in a factor graph. Following a single,… more
Docs
ACCESS-account ai machine-learning
Intermediate
Fairness and Machine Learning
The "Fairness and Machine Learning" book offers a rigorous exploration of fairness in ML and is suitable for researchers, practitioners,… more
Docs
ai data-analysis deep-learning
Intermediate, Advanced
Feed Forward NNs and Gradient Descent
Feed-forward neural networks are a simple type of network that simply rely on data to be "fed-forward" through a series of layers that… more
Website
deep-learning machine-learning neural-networks
Intermediate
File management of Visual Studio Code on clusters
Visual Studio Code, commonly known as VSCode, is a popular tool used by programmers worldwide. It serves as a text editor and an Integrated… more
Learning
Intermediate
Fine-tuning LLMs with PEFT and LoRA
As LLMs get larger fine-tuning to the full extent can become difficult to train on consumer hardware. Storing and deploying these tuned models can… more
Video
faster optimization performance-tuning
Intermediate, Advanced
Framework to help in scaling Machine Learning/Deep Learning/AI/NLP Models to Web Application level
This framework will help in scaling Machine Learning/Deep Learning/Artificial Intelligence/Natural Language Processing Models to Web Application… more
Learning
ai deep-learning machine-learning
Intermediate
FreeSurfer Tutorials
The official MGH / Harvard tutorial page for FreeSurfer. The FreeSurfer group has provided and designed a series of tutorials for using FreeSurfer… more
Learning
data-analysis image-processing psychology
Beginner, Intermediate
FSL Lectures
This is the official University of Oxford FSL group lecture page. This includes information on upcoming and past courses (online and in-person), as… more
Learning
data-analysis image-processing psychology
Beginner, Intermediate, Advanced
Fundamentals of R Programming
This course is an introduction to the R programming language and covers the fundamental concepts needed to operate in the R environment. This course… more
Learning
Beginner
Gaussian 16
Gaussian 16 is a computational chemistry package that is used in predicting molecular properties and understanding molecular behavior at a quantum… more
Tool
gaussian computational-chemistry
Intermediate, Advanced
Geocomputation with R (Free Reference Book)
Below is a link for a book that focuses on how to use "sf" and "terra" packages for GIS computations. As of 5/1/2023, this book… more
Learning
Beginner, Intermediate
Gesture Classifier Model using MediaPipe
MediaPipe is Google's open-source framework for building multimodal (e.g., video, audio, etc.) machine learning pipelines. It is highly… more
Docs
ai computer-vision visualization
Intermediate
GIS: Projections and their distortions
In GIS, projections are helpful to take something plotted on a globe and convert it to a flat map that we can print or show on a screen.… more
Learning
Beginner, Intermediate
GIS: What is a Geodetic Datums?
Often when working with GIS, or spatial data, one encounters the word "datum" and it may require that you choose a "datum" when… more
Learning
Beginner
Git Branching Workflow and Maneuvers
A couple of resources that:
1.) Presents and defends a git branching workflow for stable collaborative git based projects. ("A… more
Learning
Beginner, Intermediate, Advanced
Globus Documentation
Globus is a data transfer, sharing, automation, and discovery service used by hundreds of thousands of researchers to manage "big data" at… more
Docs
cloud-storage data-sharing data-management
Beginner, Intermediate, Advanced
GPU Acceleration in Python
This tutorial explains how to use Python for GPU acceleration with libraries like CuPy, PyOpenCL, and PyCUDA. It shows how these libraries can speed… more
Learning
machine-learning big-data data-analysis
Beginner, Intermediate
GPU Computing Workshop Series for the Earth Science Community
GPU training series for scientists, software engineers, and students, with emphasis on Earth science applications.
The content of this… more
Learning
optimization performance-tuning profiling
Beginner
Guide to building AirSim on Linux machines
This article provides step-by-step instructions on how to build AirSim, a simulator for autonomous vehicles, on Linux. It includes both Docker and… more
Docs
documentation github github-pages
Beginner, Intermediate
Handwritten Digits Tutorial in PyTorch
This tutorial is essentially the "hello world" of image recognition and feed-forward neural network (using PyTorch). Using the MNIST… more
Website
ai visualization deep-learning
Intermediate
Harnessing the Power of Cloud and Machine Learning for Climate and Ocean Advances
Documentation and presentation on how to use machine learning and deep learning framework using TensorFlow, Keras and sci-kit learn for Climate and… more
Learning
Intermediate
Header-only C++ JSON library
JSON is a lightweight format for storing and transporting data, for example in a config file. This library is header-only, and has easy-to-read… more
Learning
Intermediate, Advanced
High Performance Computing (HPC) 101 - Cluster
High Performance Computing (HPC) Cluster
Video
Beginner, Intermediate
High performance computing 101
An introductory guide to High Performance Computing.
Website
Beginner
Horovod: Distributed deep learning training framework
Horovod is a distributed deep learning training framework. Using horovod, a single-GPU training script can be scaled to train across many GPUs in… more
Tool
deep-learning distributed-computing gpu
Intermediate, Advanced
Hour of Ci
Hour of Cyberinfrastructure (Hour of CI) is a nationwide campaign to introduce undergraduate and graduate students to cyberinfrastructure and… more
Learning
Beginner
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev
A tutorial entitled "How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev" presented at SciPy 2023… more
Learning
data-sharing data-management-software data-reproducibility
Beginner, Intermediate, Advanced
How to Build a Great Relationship with a Mentor
Emphasizes benefits of being mentored. Describes how to identify and choose a mentor. Suggests a path forward. Not mentor or two-way focused.
Website
mentorship professional-development workforce-development
Beginner
How to Get the Most Out of a Mentoring Relationship by The Plank Center
Backed by collegiate white papers, top industry professionals, and researchers, The Plank Center’s Mentorship Guide offers basic tips and tricks on… more
Tool
mentorship professional-development training
Beginner
How to use Rclone
Learn how to use Rclone to transfer data, specifically from your local drive to the Open Storage Network, vice versa.
Learning
Beginner
How-To Video: ACCESS Allocations
This video will walk you through the process of efficiently utilizing and managing your ACCESS project(s). Here, you’ll find instructions on how to… more
Video
ACCESS-account ACCESS-allocations allocation-management
Beginner
HPC-AI Resources for STEM and Non-STEM Researchers
This repository offers accessible resources and workshops on AI and high-performance computing (HPC), designed for both STEM and non-STEM majors. The… more
Learning
Beginner
HPCwire
HPCwire is a prominent news and information source for the HPC community. Their website offers articles, analysis, and reports on HPC technologies,… more
Website
documentation pytorch data-science
Beginner, Intermediate, Advanced
Implementing Markov Processes with Julia
The following link provides an easy method of implementing Markov Decision Processes (MDP) in the Julia computing language. MDPs are a class of… more
Tool
Intermediate, Advanced
Info about retiring of R GIS packages rgdal, rgeos, maptools in 2023
R GIS packages "rgdal", "rgeos", and "maptools" are package set to be archived and no longer supported by end of 2023… more
Docs
Beginner, Intermediate, Advanced
InsideHPC
InsideHPC is an informational site offers videos, research papers, articles, and other resources focused on machine learning and quantum computing… more
Website
ai machine-learning community-outreach
Beginner, Intermediate, Advanced
Installing Rocky Linux Operating System
Rocky Linux is an open-source enterprise operating system. It is compatible with Red Hat Enterprise Linux (RHEL). It is a community-driven project… more
Learning
unix-environment software-installation
Beginner
Intro to GenAI Chatbot
tutorial on introduction to making a AI Chat assistant using GenAI API
Learning
Beginner
Intro to Machine Learning on HPC
This tutorial introduces machine learning on high performance computing (HPC) clusters. While it focuses on the HPC clusters at The University of… more
Docs
ai supervised-learning unsupervised-learning
Beginner
Intro to Statistical Computing with Stan
The Stan language is used to specify a (Bayesian) statistical model with an imperative program calculating the log probability density function. Here… more
Docs
data-analysis machine-learning monte-carlo
Beginner, Intermediate
Introduction to GPU/Parallel Programming using OpenACC
Introduction to the basics of OpenACC.
Slides
Beginner
Introduction to Linux CLI for Researchers
The goal of this video is to help researchers and students recently given allocations to High Performance Compute resources a basic introduction to… more
Learning
bash ssh research-facilitation
Beginner
Introduction to MP
Open Multi-Processing, is an API designed to simplify the integration of parallelism in software development, particularly for applications running… more
Slides
Intermediate
Introduction to Parallel Computing Tutorial
The tutorial is intended to provide a brief overview of the extensive and broad topic of Parallel Computing. It covers the basics of parallel… more
Learning
Beginner
Introduction to Parallel Programming for GPUs with CUDA
This tutorial provides a comprehensive introduction to CUDA programming, focusing on essential concepts such as CUDA thread hierarchy, data parallel… more
Learning
Intermediate
Introduction to Probabilistic Graphical Models
This website summarizes the notes of Stanford's introductory course on probabilistic graphical models.
It starts from the very basics and… more
Learning
Beginner, Intermediate
Introduction to Vizualization on HPC Using Python
This workshop has an introduction to the concepts of visualization followed by hands on exercises. The concepts section has Speaker Notes, and the… more
Learning
visualization documentation training
Beginner
Introductory Python Lecture Series
A lecture and notes with the goal of teaching introductory python. Starting by understanding how to download and start using python, then expanding… more
Learning
documentation programming python
Beginner
Introductory Tutorial to Numpy and Pandas for Data Analysis
In this tutorial, I present an overview with many examples of the use of Numpy and Pandas for data analysis. Beginners in the field of data analysis… more
Docs
Beginner
iOS CoreML + SwiftUI Image Classification Model
This tutorial will teach step-by-step how to create an image classification model using Core ML in XCode and integrate it into an iOS app that will… more
Docs
Beginner
Jetstream Home
Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research regardless of your project’s scale—even if you… more
Website
Beginner, Intermediate, Advanced
Jetstream2 Docs Site
Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research regardless of your project’s scale—even if you… more
Docs
Beginner, Intermediate, Advanced
Jetstream2 Status
Jetstream2 makes cutting-edge high-performance computing and software easy to use for your research regardless of your project’s scale—even if you… more
Website
Beginner, Intermediate, Advanced
Language models and using HPC resources
Documentation and research based on the latest NLP text generation detection methods for 2023.
Learning
Intermediate
Learn Python Online
Learn Python online with these distance learning courses.
Website
professional-development training python
Beginner
Linux Tutorial from Ryan's Tutorials
The following pages are intended to give you a solid foundation in how to use the terminal, to get the computer to do useful work for you. You won… more
Learning
file-systems bash unix-environment
Beginner
Long Tales of Science: A podcast about women in HPC
A series of interviews with women in the HPC community
Website
science-gateway community-outreach professional-development
Beginner, Intermediate, Advanced
Machine Learning in Astrophysics
Machine learning is becoming increasingly important in field with large data such as astrophysics. AstroML is a Python module for machine learning… more
Docs
plotting big-data image-processing
Intermediate
Machine Learning in R online book
The free online book for the mlr3 machine learning framework for R. Gives a comprehensive overview of the package and ecosystem, suitable from… more
Learning
data-analysis machine-learning r
Beginner, Intermediate, Advanced
Machine Learning with sci-kit learn
In the realm of Python-based machine learning, Scikit-Learn stands out as one of the most powerful and versatile tools available. This introductory… more
Learning
Beginner
Managing and Optimizing Your Jobs on HPC
An overview of tools and methods to manage and optimize jobs and HPC workflows
Video
memory optimization batch-jobs
Intermediate
marimo | a next generation python notebook
Introduction seminar for new reactive python notebook from marimo ambassador.
Tool
Beginner, Intermediate, Advanced
Master's in Data Science Program Guide - TechGuide
A master’s degree in data science helps prepare professionals to take the next career step. This article will focus primarily on data science, a… more
Website
big-data data-analysis data-science
Advanced
Master’s in Cybersecurity Degree Essentials
Offers comprehensive information on various master's degree options in cybersecurity, including program details, admission requirements, and… more
Website
resources professional-development cybersecurity
Beginner, Intermediate, Advanced
MATLAB bioinformatics toolbox
Bioinformatics Toolbox provides algorithms and apps for Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology.… more
Tool
visualization data-analysis bioinformatics
Beginner, Intermediate, Advanced
MATLAB with other Programming Languages
MATLAB is a really useful tool for data analysis among other computational work. This tutorial takes you through using MATLAB with other programming… more
Tool
Beginner, Intermediate, Advanced
MDAnalysis - Python library for the analysis of molecular dynamics simulations
MDAnalysis is a python based library of tools for the analysis of molecular dynamics simulations. It is able to read and write many popular… more
Tool
computational-chemistry materials-science python
Beginner, Intermediate, Advanced
Mechanism and Implementation of Various MPI Libraries
There is a detailed explanation about communication routines and managing methods of different MPI libraries, as well as several exercises designed… more
Website
Beginner
Metadata Systems
Metadata is a vital topic in libraries and librarianship, encompassing structured information used for accessing digital resources. The definition of… more
Learning
Intermediate
MNIST Handwritten Digits Tutorial
This tutorial will give you an introduction to neural networks using the ever-famous MNIST handwritten digits database!
Presented by Robin… more
Learning
Molecular Dynamics Tutorials for Beginner's
Links to MD tutorials for beginner's across various simulation platforms.
Learning
Beginner
Moving-Lid-Driven Flow Simulation by Finite Difference Method
The listed repository contains code written in C++ to model the flow inside a cavity with a lid moving above from left to right by discretizing… more
Docs
Intermediate
MPI Resources
Workshop for beginners and intermediate students in MPI which includes helpful exercises. Open MPI documentation.
Learning
Beginner, Intermediate
National Public Radio (NPR)
Pluses and challenges of mentor selection. Offers tips for acquiring a mentor (finding, asking). And how to be a good mentee. SMART framework… more
Learning
mentorship professional-development
Beginner
Natural Language Processing with Deep Learning
CS244N is a renowned natural language processing course offered by Stanford University and taught by Christopher Manning. It covers a wide range of… more
Video
natural-language-processing training workforce-development
Beginner, Intermediate
Navier-Stokes Cahn-Hilliard (NSCH) for MOOSE Framework
The MOOSE Navier-Stokes Cahn-Hilliard (NSCH) application is a library for implementing simulation tools that solve the Navier-Stokes Cahn-Hilliard… more
Website
Intermediate
NCSA HPC-Moodle
Self-paced tutorials on high-end computing topics such as parallel computing, multi-core performance, and performance tools. Some of the tutorials… more
Learning
training workforce-development
Beginner, Intermediate, Advanced
Neocortex Documentation
Neocortex is a new supercomputing cluster at the Pittsburgh Supercomputing Center (PSC) that features groundbreaking AI hardware from Cerebras… more
Docs
documentation ai deep-learning
Beginner
NERSC Training and Tutorials
A comprehensive collection of NERSC developed training and tutorial events, offered on regular schedules. All sessions are archived, including slide… more
Learning
Beginner, Intermediate, Advanced
Neural Networks in Julia
Making a neural network has never been easier! The following link directs users to the Flux.jl package, the easiest way of programming a neural… more
Tool
ai deep-learning machine-learning
Intermediate, Advanced
Neurodesk
Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data. Analysis pipelines for… more
Website
psychology containers software-installation
Beginner, Intermediate, Advanced
NITRC
The Neuroimaging Tools and Resources Collaboratory (NITRC) is a neuroimaging informatics knowledge environment for MR, PET/SPECT, CT, EEG/MEG,… more
Website
data-analysis image-processing data-sharing
Beginner, Intermediate, Advanced
Numba: Compiler for Python
Numba is a Python compiler designed for accelerating numerical and array operations, enabling users to enhance their application's performance… more
Docs
vectorization optimization performance-tuning
Intermediate, Advanced
Numpy - a Python Library
Numpy is a python package that leverages types and compiled C code to make many math operations in Python efficient. It is especially useful for… more
Tool
documentation big-data data-analysis
Beginner, Intermediate
Oakridge Leadership Computing Facility (OLCF) Training Events and Archive
Upcoming training events and archives of training materials detailing general HPC best practices as well as how to use OLCF resources and services.
Learning
Beginner, Intermediate, Advanced
Official Documentation for PyTorch and NumPy
The official documentation for PyTorch, a machine learning tensor-based framework, and NumPy, which allows for support for ndarrays which is useful… more
Docs
deep-learning neural-networks pytorch
Beginner
Official Documentation of VisIt
VisIt is a prominent open-source, interactive parallel visualization and graphical analysis tool predominantly used for viewing scientific data. Its… more
Docs
visIt novel-accelerators particle-physics
Intermediate, Advanced
Official Python Documentation
The official documentation for Python 3.11.5. Python comes with a lot of features built into the language, so it is worth taking a look as you code.
Docs
One mentor isn't enough. Here's how I built a network of mentors
An article from Science Adviser. An easy read on mentoring tips in the science community.
Learning
mentorship professional-development
Beginner
Online Bachelor's in Data Science Program Guide - TechGuide
The realm of data science is one that onlookers regard with curiosity and respect. There are a lot of unknowns in this area of study that only… more
Website
machine-learning big-data data-analysis
Intermediate
Online Master's in Business Analytics Program Guide - TechGuide
A degree in business analytics looks different in today’s world than it did a decade ago. In its most current application, business analytics uses… more
Website
machine-learning big-data data-analysis
Advanced
OnShape Documentation
This contains documentation for getting started with using OnShape for CAD. OnShape cloud-hosted CAD software that lets you work with others like on… more
Tool
Beginner
OnShape FeatureScripts: Custom features for everyone
OnShape FeatureScripts allow users to create their own features via OnShape's programming language. The user can make these as simple or complex… more
Tool
documentation materials-science particle-physics
Intermediate, Advanced
Open OnDemand Architecture
The webpage provides an overview of the architecture of Open OnDemand, a web-based interface for high-performance computing (HPC) resources. It… more
Docs
authentication open-ondemand data-security
Beginner, Intermediate, Advanced
Open Storage Network
The Open Storage Network, a national resource available through the XSEDE resource allocation system, is high quality, sustainable, distributed… more
Website
open-storage-network data-management data-retention
Beginner, Intermediate, Advanced
Open-Source Server Virtualization Platform
Proxmox Virtual Environment is a hyper-converged infrastructure open-source software. It is a hosted hypervisor that can run operating systems… more
Learning
Beginner
OpenHPC: Beyond the Install Guide
Materials for the "OpenHPC: Beyond the Install Guide" half-day tutorial, first offered at PEARC24. The goal of this repository is to let… more
Learning
jetstream administering-hpc cluster-management
Intermediate
OpenMP and Multithreaded Jobs in GRASS
Techniques and support for multithreaded geospatial data processing in GRASS.
Tool
Intermediate
Optimizing Research Workflows - A Documentation of Snakemake
Snakemake is a powerful and versatile workflow management system that simplifies the creation, execution, and management of data analysis pipelines.… more
Docs
documentation data-analysis data-reproducibility
Intermediate, Advanced
Pandas - Python
pandas is a fast, powerful, flexible and easy to use open source data analysis and manipulation tool, built on top of the Python programming language… more
Docs
Beginner, Intermediate
Paraview UArizona HPC links (beginner)
These links take you to visualization resources supported by the University of Arizona's HPC visualization consultant (rtdatavis.github.io). The… more
Docs
Beginner
Performance Engineering Of Software Systems
A class from MITOpenCourseware that gives a hands on approach to building scalable and high-performance software systems. Topics include performance… more
Learning
optimization parallelization training
Intermediate, Advanced
PetIGA, an open-source code for isogeometric analysis
This documentation provides an overview of the PetIGA framework, an open source code for solving multiphysics problems with isogeometric analysis.… more
Docs
finite-element-analysis documentation fluid-dynamics
Beginner, Intermediate
phenoACCESS-24 workshop program materials
phenoACCESS-24: Workshop on Research Computing and Plant Phenotyping
High-throughput plant phenotyping is computationally intensive… more
Website
big-data data-management metadata
Intermediate
Practical Machine Learning with Python
This video series provides a holistic understanding of machine learning, covering theory, application, and inner workings of supervised, unsupervised… more
Video
machine-learning programming python
Advanced
Probabilistic Semantic Data Association for Collaborative Human-Robot Sensing
Humans cannot always be treated as oracles for collaborative sensing. Robots thus need to maintain beliefs over unknown world states when receiving… more
Docs
Advanced
Python Data and Viz Training (CCEP Program)
5 Days of recordings of Python data analysis and visualization training.
Learning
Beginner, Intermediate
Python Tools for Data Science
Python has become a very popular programming language and software ecosystem for work in Data Science, integrating support for data access, data… more
Video
Intermediate
PyTorch Introduction
This is a very barebones introduction to the PyTorch framework used to implement machine learning. This tutorial implements a feed-forward neural… more
Website
deep-learning machine-learning neural-networks
Intermediate
Quick and Robust Data Augmentation with Albumentations Library
Data augmentation is a crucial step in the pipeline for image classification with deep learning. Albumentations is an extremely versatile Python… more
Tool
Advanced
R for Data Science
R for Data Science is a comprehensive resource for individuals looking to harness the power of the R programming language for data analysis,… more
Learning
visualization data-analysis data-science
Beginner, Intermediate, Advanced
R for Research Scientists
A book for researchers who contribute code to R projects: This booklet is the result of my work with the Social Cognition for Social Justice lab. It… more
Learning
software-carpentry workforce-development r
Beginner, Intermediate
Raftlib: Open Source library for concurrent data processing pipelines
Raftlib is an open-source C++ Library that provides a framework for implementing parallel and concurrent data processing pipelines. It is designed… more
Tool
parallelization pthreads openmp
Intermediate, Advanced
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks
This repository contains information about Jupyter Widgets and how they can be used to develop interactive workflows, data dashboards, and web… more
Website
Beginner, Intermediate, Advanced
Regular Expressions
Regular expressions (sometimes referred to as RegEx) is an incredibly powerful tool that is used to define string patterns for "find" or… more
Learning
Beginner, Intermediate
Regulated Research Community of Practice
The daily news clearly shows the increasing threat to safety and privacy of data, personal as well as intellectual property. While the requirements… more
Website
community-outreach cybersecurity
Beginner, Intermediate, Advanced
Reinforcement Learning For Beginners with Python
This course takes through the fundamentals required to get started with reinforcement learning with Python, OpenAI Gym and Stable Baselines. You… more
Video
deep-learning machine-learning tensorflow
Beginner
Representation Learning in Deep Learning
Representation learning is a fundamental concept in machine learning and artificial intelligence, particularly in the field of deep learning. At its… more
Docs
deep-learning image-processing machine-learning
Intermediate
Research Security Operations Center at IU
The NSF-funded ResearchSOC helps make scientific computing resilient to cyberattacks and capable of supporting trustworthy, productive research… more
Website
Beginner, Intermediate, Advanced
Research Software Development in JupyterLab: A Platform for Collaboration Between Scientists and RSEs
Iterative Programming takes place when you can explore your code and play with your objects and functions without needing to save, recompile, or… more
Learning
Beginner, Intermediate
Research Software Engineering Training Materials
An ongoing collection of RSE training material, workshops, and resources. We are compiling this list as a starting point for future activities. We… more
Website
astrophysics data-science novel-accelerators
Beginner, Intermediate, Advanced
Resource to active inference
Active inference is an emerging study field in machine learning and computational neuroscience. This website in particular introduces "active… more
Website
Beginner, Intermediate, Advanced
RMACC Systems Administrator Workshop Slides
A compilation of the slides from this year's RMACC Sys Admin Workshop.
RMACC Sys Admin Workhop Schedule:
Tuesday
12… more
Slides
administering-hpc hpc-tools cluster-support
Intermediate, Advanced
RMACC Website
Rocky Mountain Advanced Computing Consortium Website
Website
Beginner, Intermediate, Advanced
Rockfish at Johns Hopkins University
Resources and User Guide available at Rockfish
Docs
Intermediate
Running Particle-in-Cell Simulations on HPC
WarpX is an advanced particle-in-cell code used to model particle accelerators, which needs to be run on HPC. This website contains the tutorial on… more
Docs
github github-pages novel-accelerators
Intermediate
Samtools Documentation
Samtools is a suite of programs for interacting with high-throughput sequencing data, especially in the SAM/BAM format. It offers various utilities… more
Docs
documentation data-analysis bioinformatics
Beginner, Intermediate, Advanced
Science Gateway Tool/Web App Template (Jupyter Notebook + ipywidgets)
Use this template to turn any science gateway workflow into a web application!
Learning
data-analysis github astrophysics
Beginner
Scikit-Learn: Easy Machine Learning and Modeling
Scikit-learn is free software machine learning library for Python. It has a variety of features you can use on data, from linear regression… more
Tool
Beginner, Intermediate
Scipy Lecture Notes
Comprehensive tutorials and lecture notes covering various aspects of scientific computing using Python and Scipy.
Learning
visualization data-analysis machine-learning
Beginner, Intermediate
Set Up VSCode for Python and Github
VSCode is a popular IDE that runs on Windows, MacOS, and Linux. This tutorial will explain how to get set up with VSCode to code in Python. It will… more
Learning
Setting up PyFR flow solver on clusters
These instructions were executed on the FASTER and Grace cluster computing facilities at Texas A&M University. However, the process can be… more
Learning
Advanced
Singularity/Apptainer User Manuals
Singularity/Apptainer is a free and open-source container platform that allows users to build and run containers on high performance computing… more
Docs
Intermediate
Slurm Scheduling Software Documentation
Slurm is an open source, fault-tolerant, and highly scalable cluster management and job scheduling system for large and small Linux clusters. Slurm… more
Website
cluster-management cluster-support slurm
Intermediate, Advanced
Slurm Tutorials
Introduction to the Slurm Workload Manager for users and system administrators, plus some material for Slurm programmers.
Learning
administering-hpc cluster-management hpc-cluster-architecture
Beginner
Solving differential equations with Physics-informed Neural Network
Differential equations, the backbone of countless physical phenomena, have traditionally been solved using numerical methods or analytical techniques… more
Learning
Beginner, Intermediate
Spack Documentation
Spack is a package manager for supercomputers that can help administrators install scientific software and libraries for multiple complex software… more
Docs
Intermediate
Spatial Data Science in the Cloud (Alpine HPC) using Python
Spatial Data Science is a growing field across a wide range of industries and disciplines. The open-source programming language Python has many… more
Learning
Beginner, Intermediate
SSL Configuration Generator
The webpage SSL Configuration Generator by Mozilla provides recommended SSL/TLS configurations for various server platforms, helping administrators… more
Tool
optimization computer-science data-security
Beginner, Intermediate, Advanced
TensorFlow for Deep Neural Networks
TensorFlow is a powerful framework for Deep Learning, developed by google. This specifically is their python package, which is easy to use and can be… more
Tool
documentation faster tensorflow
Intermediate, Advanced
Termius - Modern ssh platform
**Termius: The Modern SSH Client for 2023**
Termius is the future-facing SSH client that's redefining remote server access in… more
Website
cloud-computing data-sharing data-transfer
Beginner, Intermediate
Texas A&M HPRC Training Site
Training Resources and Courses offered by Texas A&M's Research Computing Group
Learning
Beginner, Intermediate, Advanced
The Official Documentation of Pandas
Pandas is one of the most essential Python libraries for data analysis and manipulation. It provides high-performance, easy-to-use data structures,… more
Docs
Beginner, Intermediate
The Theory Behind Neural Networks (Very Simplified)
This video by the YouTube channel 3Blue1Brown provides a very simplified introduction to the theory behind neural networks. This tutorial is perfect… more
Video
Beginner
The Use of High-Performance Computing Services in University Settings: A Usability Case Study of the University of Cincinnati’s High-Performance Computing Cluster
This presentation gives a detailed breakdown of the outcome of my master's thesis which was focused on making HPC Clusters accessible across all… more
Slides
Beginner, Intermediate
Thrust resources
Thrust is a CUDA library that optimizes parallelization on the GPU for you. The Thrust tutorial is great for beginners. The documentation is helpful… more
Learning
Intermediate, Advanced
Time-Series LSTMs Python Walkthrough
A walkthrough (with a Google Colab link) on how to implement your own LSTM to observe time-dependent behavior.
Website
ai deep-learning machine-learning
Advanced
Training an LSTM Model in Pytorch
This google colab notebook tutorial demonstrates how to create and train an lstm model in pytorch to be used to predict time series data. An airline… more
Learning
ai supervised-learning machine-learning
Intermediate
Trinity Tutorial for Transcriptome Assembly
Trinity is one of the most popular tool to assemble transcripts from RNA-Seq short reads. In this tutorial, we will cover the basic usage of Trinity… more
Learning
Beginner
Trusted CI
The mission of Trusted CI is to lead in the development of an NSF Cybersecurity Ecosystem with the workforce, knowledge, processes, and… more
Website
Beginner, Intermediate, Advanced
Trusted CI Resources Page
Very helpful list of external resources from Trusted CI
Website
Beginner, Intermediate, Advanced
TrustedCI Open OnDemand 2021 Audit
Open OnDemand has been audited by Trusted CI, the NSF Cybersecurity Center of Excellence, to enhance its security and maintain its status as a… more
Docs
Tutorial for OpenMP Building up and Utilization
The following link elaborates the usage of OpenMP API and its related syntax. There are also several exercises available for learners to help them… more
Website
Beginner
Ultimate guide to Unix
Unix is incredibly common and useful. This website provides all the common commands and explanations for one to get started with a unix system.
Website
Beginner
Understanding LLM Fine-tuning
With the recent uprising of LLM's many business are looking at way to adopt these LLMs and fine-tuning these models on specfic data sets to… more
Learning
Beginner, Intermediate
United Nations Mentor Handbook
The United Nations (UN) is an international organization comprising 193 Member States, including the United States. As a global organization, the UN… more
Docs
mentorship professional-development training
Beginner
UNIX/command line basics tutorial
Introductory training materials for working on the UNIX command line.
Learning
Beginner
Use Windows Subsystem for Linux for HPC Command Line Access from Windows
Windows Subsystem for Linux (WSL) provides a Linux environment for Windows users to access HPC resources fast and efficiently.
Tool
Beginner
Using Dask on HPC Systems
A tutorial on the effective use of Dask on HPC resources. The four-hour tutorial will be split into two sections, with early topics focused on novice… more
Learning
Beginner, Intermediate
Vulkan Support Survey across Systems
It's not uncommon to see beautiful visualizations in HPC center galleries, but the majority of these are either rendered off the HPC or created… more
Docs
Beginner, Intermediate
Vulkan Support Survey across Systems
It's not uncommon to see beautiful visualizations in HPC center galleries, but the majority of these are either rendered off the HPC or created… more
Learning
big-data computer-graphics workflow
Intermediate
Warewulf documentation
Warewulf is an operating system provisioning platform for Linux that is designed to produce secure, scalable, turnkey cluster deployments that… more
Website
documentation administering-hpc distributed-computing
Beginner, Intermediate
Weka
Weka is a collection of machine learning algorithms for data mining tasks. It contains tools for data preparation, classification, regression,… more
Tool
big-data data-analysis machine-learning
Intermediate, Advanced
What are LSTMs?
This reading will explain what a long short-term memory neural network is. LSTMs are a type of neural networks that rely on both past and present… more
Learning
ai deep-learning machine-learning
Intermediate, Advanced
What is fairness in ML?
This article discusses the importance of fairness in machine learning and provides insights into how Google approaches fairness in their ML models.… more
Docs
ai visualization data-analysis
Intermediate
What is VPN? How It Works, Types of VPN
A VPN, or Virtual Private Network, is a technology that creates a secure tunnel between your device and a VPN server. This tunnel encrypts all of… more
Website
Beginner
Why 'N How: Martinos Center for Biomedical Imaging:
The Why & How seminar series is designed to introduce research assistants, graduate students, and postdoctoral and clinical fellows – really,… more
Learning
Beginner, Intermediate, Advanced
Why Mentoring Matters and How to Get Started
Describes effective mentorship (both ways).
Website
mentorship professional-development
Beginner
Wiki for Onboarding onto the C3DDB Cluster at MGHPCC
This is a resource for researchers and students looking to on-board onto the c3ddb cluster at MGHPCC. In the code section, there are example job… more
Learning
Beginner
Women in HPC
Through collaboration and networking, WHPC strives to bring together women in HPC and technical computing while encouraging women to engage in… more
Website
Beginner
Working with Python on HPC Clusters
This tutorial series and documentation covers topics on using Python on HPC clusters. The specific steps are based on the HOPPER cluster at George… more
Docs
pytorch batch-jobs job-submission
Beginner, Intermediate
WRF in the Public Cloud
CAC summer student employee Jeff Lantz describes his experiences in running the WRF weather forecasting application in the public cloud. He compares… more
Video
Advanced