People

Kenneth Acosta

Rutgers, the State University of New Jersey

Programs

CAREERS, ACCESS CSSN

Skills

bioinformatics bash python r scripting conda pip unix-environment ssh vpn biology github genomics sftp

Michael Blackmon

Davidson College

Programs

Campus Champions, ACCESS CSSN

Skills

Wesley Brashear

Texas A&M University

Programs

ACCESS CSSN, Campus Champions

Skills

r python bioinformatics biology genomics

Carrie Brown

Pennsylvania State University

Programs

CAREERS, ACCESS CSSN, CCMNet

Skills

cleanup data-wrangling github job-array research-facilitation training community-outreach workforce-development bioinformatics genomics github-pages python r sas scripting software-carpentry distributed-computing

David Carlson

SUNY at Stony Brook

Programs

ACCESS CSSN, OnDemand

Skills

gatk trinity bash ookami research-facilitation python r slurm bioinformatics genomics biology singularity

Bala Desinghu

Harvard University

Rutgers University

Programs

ACCESS CSSN, Campus Champions, CAREERS, Northeast

Skills

proposal-request ai big-data data-analysis deep-learning dft image-processing machine-learning monte-carlo neural-networks parameter-sweeps plotting vectorization visualization random-numbers cloud-computing cloud-storage github globus s3 sftp data-management data-transfer data-sharing optimization parallelization scaling benchmarking bioinformatics molecular-dynamics natural-language-processing opencv tensorflow pytorch gaussian gromacs computational-chemistry data-science materials-science quantum-mechanics open-ondemand distributed-computing unix-environment batch-jobs pre-emption schedulers bash environment-modules git screen ssh vim professional-development proposal-development research-facilitation research-grants software-carpentry training anaconda c c++compiling conda fortran jupyterhub mathematica matlab programming python r rstudio-server scikit-learn putty vnc vpn containers dependencies docker pip podman singularity software-installation quantum-computing api job-array slurm sge pbs community-outreach

Jacob Fosso Tande

North Carolina State University

Computational Scientist

Programs

ACCESS CSSN, Campus Champions, CCMNet

Skills

sciencedmz data-transfer github jekyll research-facilitation training version-control community-outreach dft computational-chemistry gaussian quantum-mechanics fortran git bash c++python scripting azure cluster-support file-transfer globus compiling software-installation debugging dependencies jupyterhub kubernetes administering-hpc NAIRR-pilot linear-programming data-analysis big-data image-processing aws cloud-computing cloudlab cloud cloud-commercial data-lifecycle data-management data-sharing data-reproducibility data-provenance data-management-software database github-pages workflow storage s3 quota metadata memory IO-issue profiling performance-tuning benchmarking cpu-bound hpc-storage hpc-operations hpc-getting-started dtn gpu nvidia unix-environment environment-modules modules os permissions ssh ACCESS ACCESS-allocations bridges-2 expanse jetstream open-science-grid stampede3 campus-champions abstract proposal-development workforce-development software-carpentry research-grants professional-development mentorship citation gcc programming-best-practices programming lsf pbs schedulers core-hours job-submission job-sizing resources chemistry data-compliance containers pip singularity interactive-mode library-paths lmod docker

Russell Hofmann

Internet2

Programs

ACCESS CSSN, CCMNet

Skills

data-analysis machine-learning dft scaling pytorch gromacs gaussian molecular-dynamics computational-chemistry data-science genomics research-facilitation python spark spack kubernetes training

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

Alexandra Lamtyugina

University of Hawaii, Manoa

Programs

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shuai liu

University of Arkansas

Programs

ACCESS CSSN

Skills

woman facing camera on a sunny day with bay in background

Alison McClellan

Stanford University

Programs

ACCESS CSSN

Skills

r python project-management research-facilitation research-grants biology computational-chemistry genomics

Doruk Alp MUTLU

Michigan State University

Programs

ACCESS CSSN

Skills

data-analysis image-processing visualization github optimization opencv data-science slurm vim git c++c compiling jupyterhub mathematica programming programming-best-practices python pip

Katherine Nelson

Yale University

Team Lead of Computational Research Support

Programs

Campus Champions, CAREERS, ACCESS CSSN

Skills

Alyssa Pivirotto

Bryn Mawr College

Programs

ACCESS CSSN, Campus Champions

Skills

data-analysis github bash conda python r bioinformatics biology data-science genomics

Emanuela Riglioni

Programs

ACCESS CSSN

Skills

data-analysis monte-carlo machine-learning pytorch computational-chemistry materials-science particle-physics bash git ssh vim community-outreach project-management python r anaconda jupyterhub compiling

Yun Shen

Boston University

Scientific Program Analyst

Programs

CAREERS, Northeast, ACCESS CSSN, CCMNet

Skills

data-analysis big-data bioinformatics genomics data-science programming r sql software-installation Programming open-ondemand

Andrew Sherman

Yale University

Advanced Research Computing Facilitation and Education

Programs

ACCESS CSSN, Campus Champions, CAREERS

Skills

matlab programming distributed-computing parameter-sweeps slurm software-installation compiling debugging cuda parallelization vectorization mpi c fortran openmp openmpi

Sathish Srinivasan

Programs

ACCESS CSSN

Skills

ai machine-learning big-data image-processing linear-programming data-analysis visualization data-lifecycle database github sftp cephfs data-provenance data-reproducibility data-wrangling benchmarking profiling fastx gatk opencv pytorch tensorflow galaxy pegasus ansible ceph administering-hpc cluster-management cluster cifs hpc-cluster-architecture networking nfs unix-environment smb hpc-tools prometheus bash cleanup environment-modules git git-lfs modules os permissions screen scripting ssh tcp tcsh tmux vim vm x11 c c++compiling css fortran gcc html java julia mathematica matlab perl programming pthreads python r rstudio-server sas scikit-learn spark spss sql stata xml hadoop batch-jobs lsf pbs slurm sge acls federated-authentication key-management firewall putty rdp vpn vnc terminal-emulation-and-window-management centos containers dependencies docker kubernetes lmod pip podman singularity software-installation version-control

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