People

Chris Hemme

University of Rhode Island

Bioinformatics Core Director

Programs

CAREERS

Skills

big-data bioinformatics r data-analysis anaconda genomics biology

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Skills

sas data-wrangling data-management data-reproducibility biology bioinformatics genomics machine-learning psychology git github programming cleanup r

masoud keramati

Northeastern University

Programs

ACCESS CSSN

Skills

Amy Koshoffer

University of Cincinnati-Main Campus

Programs

Campus Champions

Skills

data-management data-lifecycle workflow doi file-formats biology

yaniv kovalski

Stonehill College

Programs

Northeast

Skills

biology github modules r

Steven Kuhlo

UT Dallas

Programs

TRECIS

Skills

batch-jobs cluster-management cluster-support ssh x11 rdp samba sftp smb cpu-architecture hardware gpu hpc-cluster-architecture hpc-cluster-build gpfs nfs networking infiniband interconnect

Ruben Lara

Georgia Institute of Technology

Programs

Campus Champions

Skills

shuai liu

University of Arkansas

Programs

ACCESS CSSN

Skills

Angelo Lucia

University of Rhode Island

Programs

Skills

monte-carlo biology computational-chemistry fortran matlab

Lenore Martin

University of Rhoide Island

Tenured Associate Professor

Programs

CAREERS

Skills

Vinayak Mathur

Cabrini University

Assistant Professor

Programs

CAREERS

Skills

bioinformatics genomics biology

woman facing camera on a sunny day with bay in background

Alison McClellan

Stanford University

Programs

ACCESS CSSN

Skills

r python project-management research-facilitation research-grants biology computational-chemistry genomics

Aidan McCrillis

University of Rhode Island

Programs

CAREERS

Skills

bioinformatics data-science biology python

Kali McLennan

University of Oklahoma

Programs

Campus Champions, Great Plains

Skills

Timothy Middelkoop

Internet2

Research Engagement Engineer

Programs

ACCESS CSSN, Campus Champions, CCMNet, Great Plains

Skills

workforce-development python batch-jobs kubernetes software-carpentry containers docker dependencies version-control spack software-installation singularity podman pip lmod interactive-mode putty slurm core-hours scheduling gcc jupyterhub programming programming-best-practices rstudio-server sql abstract citation community-outreach professional-development project-management proposal-development research-facilitation research-grants training jetstream osg affinity-group ACCESS-allocations bash environment-modules git git-lfs modules os permissions screen scripting ssh tcp tmux vim vm administering-hpc ansible cluster cluster-management cluster-support configuration-automation deployment DNS ethernet file-systems hardware hpc-cluster-architecture hpc-cluster-build hpc-getting-started hpc-operations hpc-storage hpc-tools htc infiniband interconnect networking nfs provisioning puppet unix-environment api debugging data-transfer data-sharing file-transfer github github-pages globus s3 quota scratch sftp aws azure cloud cloud-commercial cloud-computing cloud-open-source cloud-storage cloudlab gce openstack linear-programming open-storage-network

Daniel Morales

Florida International University

Programs

Campus Champions

Skills

Sami Muslmani

University of Arizona

Programs

ACCESS CSSN

Skills

biology physiology abstract citation community-outreach publication-database research-facilitation

Nicholas Panchy

Michigan State University

Programs

Campus Champions

Skills

biology genomics open-ondemand slurm bash modules conda python r easybuild bioinformatics

Deborah Penchoff

University of Tennessee - Knoxville

Programs

Campus Champions

Skills

ai deep-learning machine-learning neural-networks reinforcement-learning supervised-learning unsupervised-learning big-data computer-graphics data-analysis dft plotting visualization data-management data-sharing github github-pages benchmarking checkpoint cpu-bound memory parallelization performance-tuning scaling fluid-dynamics gaussian molecular-dynamics openfoam pytorch tensorflow cluster cluster-management cpu-architecture distributed-computing gpu hardware hpc-cluster-architecture hpc-operations lustre networking nvidia unix-environment bash environment-modules git ssh vim vm ACCESS ACCESS-account adding-users allocation-management allocation-time allocation-users anvil bridges-2 stampede2 stampede3 abstract affiliations citation community-outreach management mentorship professional-development project-management proposal-development publication-database research-facilitation research-grants training workforce-development xsede c++fortran jupyterhub mathematica matlab mpi openmp openmpi programming python r spark batch-jobs core-hours job-accounting job-submission pbs slurm biology computational-chemistry data-science quantum-mechanics data-compliance duo vpn spack version-control profile proposal-request

Alyssa Pivirotto

Bryn Mawr College

Programs

ACCESS CSSN, Campus Champions

Skills

data-analysis github bash conda python r bioinformatics biology data-science genomics

Edwin Posada

Temple University

Programs

Campus Champions

Skills

People

Skills

Organization

Program