People

Feseha Abebe-Akele

Elizabeth City State University

Assistant Professor

Programs

CCMNet

Skills

password account login profile generative-ai unsupervised-learning supervised-learning machine-learning big-data data-analysis cloud-computing cloud-open-source archiving backup data-access-protocols data-transfer data-wrangling database file-formats file-system workflow storage sftp quota metadata github-pages github file-transfer benchmarking scaling gatk api galaxy file-systems unix-environment bash os permissions screen scripting ssh tmux vim git ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website adding-users allocation-management allocations-proposal allocations-extension project-renewal SU bridges-2 stampede3 stampede2 ranch jetstream abstract affiliations citation community-outreach mentorship professional-development workforce-development training research-grants research-facilitation proposal-development xsede publication-database c compiling conda gcc gui java mpi sas r python programming-best-practices programming perl openmpi sql xml slurm process-killed pending-jobs batch-jobs job-submission bioinformatics biology data-science genomics putty vpn duo data-compliance centos dependencies docker library-paths software-installation singularity pip documentation trinity containers data-sharing hpc-getting-started

Kenneth Acosta

Rutgers, the State University of New Jersey

Programs

CAREERS, ACCESS CSSN

Skills

bioinformatics bash python r scripting conda pip unix-environment ssh vpn biology github genomics sftp

Ric Anderson

University of Arizona

Programs

Campus Champions

Skills

Daniel Benedict

Texas Tech University

Programs

CCMNet

Skills

Wesley Brashear

Texas A&M University

Programs

ACCESS CSSN, Campus Champions

Skills

r python bioinformatics biology genomics

Trey Breckenridge

Mississippi State University

Programs

Campus Champions

Skills

Carrie Brown

Pennsylvania State University

Programs

CAREERS, ACCESS CSSN, CCMNet

Skills

cleanup data-wrangling github job-array research-facilitation training community-outreach workforce-development bioinformatics genomics github-pages python r sas scripting software-carpentry distributed-computing

David Carlson

SUNY at Stony Brook

Programs

ACCESS CSSN, OnDemand

Skills

gatk trinity bash ookami research-facilitation python r slurm bioinformatics genomics biology singularity

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Skills

Jeff Falgout

US Geological Survey

Programs

Campus Champions

Skills

William Feng

Rutgers University-New Brunswick

Programs

CAREERS

Skills

genomics biology java r python programming programming-best-practices sql bioinformatics data-analysis

Matt Ferguson

Boise State University

Associate Professor of Physics

Programs

At-Large

Skills

Rob Harbert

Stonehill College

Assistant Professor of Biology and Bioinformatics

Programs

Northeast

Skills

anaconda biology github big-data bioinformatics genomics gis r sas distributed-computing batch-jobs sftp ssh open-ondemand

Lindsey Hauff

Rutgers University

Programs

Skills

genomics r spss bioinformatics slurm python bash scheduling

Jordan Hayes

University of California-Riverside

Programs

Campus Champions

Skills

bash anaconda singularity modules gpfs slurm duo compiling conda jupyterhub mpi pip rstudio-server jekyll xml big-data data-management data-transfer file-formats aws cyverse training software-carpentry bioinformatics fastx gatk genomics smrt trinity gaussian gromacs amber charmm namd pytorch scikit-learn comsol atlas git github github-pages programming programming-best-practices cleanup version-control c pthreads c++fortran java python r sql xsede scheduling job-array pending-jobs pre-emption api batch-jobs checkpoint dmtcp docker kubernetes distributed-computing environment-modules parameter-sweeps cpu-bound scripting tmux screen terminal-emulation-and-window-management administering-hpc cluster-management cgroups prometheus cluster-support file-transfer globus x11 vpn ssh smb sftp samba rdp putty vnc federated-authentication cilogon hardware infiniband interconnect nvidia hpc-cluster-build gpu acls hpc-storage cifs nfs spectrum-scale networking dtn ethernet firewall sciencedmz tcp schedulers sge pbs encryption key-management software-installation easybuild spark unix-environment vim vm

Brian Haymore

University of Utah

HPC Team Manager

Programs

Campus Champions, CCMNet

Skills

file-systems bash batch-jobs scheduling terminal-emulation-and-window-management cgroups s3 ceph cluster-support file-transfer samba putty sftp smb ssh x11 hardware gpu hpc-cluster-build networking dtn firewall tcp schedulers slurm acls cifs lustre nfs hpc-operations backup permissions provisioning unix-environment sciencedmz storage community-outreach scripting environment-modules software-installation compiling os hpc-storage cloud-storage training file-system file-limit quota open-ondemand xdmod administering-hpc cluster cluster-management condo configuration-automation deployment ethernet hpc-arch-and-perf hpc-cluster-architecture infiniband interconnect nvidia screen tmux vim modules mentorship professional-development workforce-development c perl job-submission job-failure job-charging job-accounting core-hours pending-jobs pre-emption process-killed resources cmmc cui cybersecurity duo data-security secure-data-architecture lmod containers singularity centos

Chris Hemme

University of Rhode Island

Bioinformatics Core Director

Programs

CAREERS

Skills

big-data bioinformatics r data-analysis anaconda genomics biology

Russell Hofmann

Internet2

Programs

ACCESS CSSN, CCMNet

Skills

data-analysis machine-learning dft scaling pytorch gromacs gaussian molecular-dynamics computational-chemistry data-science genomics research-facilitation python spark spack kubernetes training

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Skills

ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal anvil bridges-2 darwin delta documentation expanse rockfish stampede2 transfer-su xdmod tickets data-analysis deep-learning dft machine-learning neural-networks openstack globus github benchmarking checkpoint debugging memory optimization parallelization performance-tuning profiling scaling scripting amber bioinformatics charmm gamess gaussian gromacs lammps molecular-dynamics namd pytorch tensorflow biology computational-chemistry data-science genomics quantum-mechanics open-ondemand cgroups condo gpu nvidia batch-jobs schedulers job-array bash git pthreads ssh proposal-development research-facilitation research-grants community-outreach anaconda c c++compiling conda cuda fortran jupyterhub mpi openmp openmpi programming python containers dependencies easybuild docker interactive-mode pip singularity software-installation

James Hutcheson

Baylor University

Programs

Campus Champions, ACCESS CSSN

Skills

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Skills

sas data-wrangling data-management data-reproducibility biology bioinformatics genomics machine-learning psychology git github programming cleanup r

Konda Reddy Karnati

Bowie State University

Programs

Campus Champions

Skills

machine-learning big-data bash ACCESS ACCESS-account management campus-champions xsede professional-development mentorship cuda programming python genomics computational-chemistry artificial-intelligence bioinformatics centos

Ruben Lara

Georgia Institute of Technology

Programs

Campus Champions

Skills

Campus Champions

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